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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa10LNT0575000.1

CTAGCGGAGGGCGGCAAGGGGGCCGCCTGCAAAATTCCATGCCCCCCCTCGCCGCCCATTTGCAGGCGGCCCCCCGCACAGTATAAAATCGCCCTAGCGGAGGGCGGCAAGGGGGCCGCCTGCAAATTTCGTTGACGGCCGTCGCCCGAGAGCGAACGGCCGTCTGCCACGTCATTTTCGCCGCCCTCTGAGAGGGCGATTTTTAAAATGGAAAATTATTTTTTGTAAAACTTTTAATAAAAAAAATTATAAATAAA

Coding Potentia
Explanation CPC Score
noncoding -1.37753
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
Osa10LNT0575000.1 DTM_#DNAt_MULE_japo_Os0385 Chr10 - 19814294 19822169 256
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa10LNT0575000.1 10 nan Morphological trait Seed RZ811 RG561
Osa10LNT0575000.1 10 qRf-10 Physiological trait Sterility RZ811 RG561
Osa10LNT0575000.1 10 Rf1 Physiological trait Sterility nan nan
Osa10LNT0575000.1 10 nan Morphological trait Panicle/flower RM171 RM333
Osa10LNT0575000.1 10 nan Physiological trait Sterility C701 C16
Osa10LNT0575000.1 10 nan Physiological trait Sterility RZ811 RG561
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus