Transcript

Sequence

>Osa07LNT0531900.1

TGTATGTGGAAATATGTTAAAGAAAATAAAAGAACTAAGTGAAATAAAATAAAATAAAATTGTTGTAGGCAAACTCATCTGTGACGGGCTCTAACTGTGGGGCCGTCACAGGTGACCTCACCTGTGACGGCCCAGAGAGTTGGGCCCGTCATAGGTGGCCTCACCTGTGACGGCTCCACAGTTGGCGCCCGTCACAGGTGAGGCCACTTGTGA

Coding Potentia

Explanation	CPC Score
noncoding	-1.27925

Genome Browser

Expression

Axis x: Treatment
Axis y: FPKM
Value above bar: Standard deviation

Variation

Transcript ID	Chromosome	Locus	Ref	Alt

Transposon

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

small RNA targets

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End

QTL

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa07LNT0531900.1	7	grb7-2	Morphological trait	Seed	RM505	RM336
Osa07LNT0531900.1	7	QRl7	Morphological trait	Culm/leaf	CDO497	CDO385
Osa07LNT0531900.1	7	qLVG7-2	Resistance or Tolerance	Cold tolerance	RM336	RM118
Osa07LNT0531900.1	7	nan	Resistance or Tolerance	Other soil stress tolerance	R1245	R1789
Osa07LNT0531900.1	7	nan	Physiological trait	Eating quality	R1245	RM234
Osa07LNT0531900.1	7	nan	Physiological trait	Eating quality	R1245	R1789
Osa07LNT0531900.1	7	qSDS-7-2	Physiological trait	Germination/dormancy	RM320	RM234
Osa07LNT0531900.1	7	nan	Others	Others	RZ395	RZ264
Osa07LNT0531900.1	7	qCIVG7-2	Resistance or Tolerance	Cold tolerance	RM336	RM118

pre-miRNA

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

GWAS

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus