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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa02LNT0479500.1

CCTTTTTTGGCGCCAGAGTGGCTGGCGCCGTCATCCAACGGGACGGCGCCATCTCTGGCGCCGTCCTCCTGCCACCGTGGCGCATGCGAACCGACGTGGCAGGAGGAGGGCGCCAGCCATGCTGGCGCCGCCGCCTCCATTCCTGTTTCTCTGTATGGAGTTGCAACGGTGTCTTTTTTATTTTATTTTTTCGGATGTTTTTTCACACTTAGGATCACGATACAACCAA

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.0139548
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
Osa02LNT0479500.1 DTM_#DNAt_MULE_japo_Os0105 Chr2 - 20299323 20300699 228
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa02LNT0479500.1 osa-miR5825 Cleavage 4.0 8.056 1 24
Osa02LNT0479500.1 osa-miR167e-3p Cleavage 5.0 11.941 1 21
Osa02LNT0479500.1 osa-miR167i-3p Cleavage 5.0 11.941 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa02LNT0479500.1 2 qPH-2 Morphological trait Dwarf RG324 RG83
Osa02LNT0479500.1 2 nan Morphological trait Root RG171 RG157
Osa02LNT0479500.1 2 np2.2 Morphological trait Culm/leaf RM324 RM262
Osa02LNT0479500.1 2 qSS-2 Physiological trait Sterility RM301 RM263
Osa02LNT0479500.1 2 2-3SY Physiological trait Source activity RG171 RG157
Osa02LNT0479500.1 2 qRTH-2 Morphological trait Root RM262 RM341
Osa02LNT0479500.1 2 qSTA-2 Morphological trait Root RM262 RM341
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus