Transcript

Sequence

>Osa01LNT0454100.1

GTAGTTTAGGCCCGATTGAGATAACATTCCATATCTCAAACGGGCCTCAAGTTGTGGCCCGTCACAGATGACCATCATCCATGACGTGCACCAACTTGAGGCCCGTTTGAGATAACAACTAGGCCCGTCACAGACGACTCATCAGTGACGGGCTATACACTTAATCTCTATCGGGCATTAACTAAAGCCCGTCACCGATGACTATTTTTTTTATTTTCATATGAAATATTTATATTTGTAAGTTGAACTACAGTAAAATAAT

Coding Potentia

Explanation	CPC Score
noncoding	-1.308

Genome Browser

Expression

Axis x: Treatment
Axis y: FPKM
Value above bar: Standard deviation

Variation

Transcript ID	Chromosome	Locus	Ref	Alt

Transposon

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

small RNA targets

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End

QTL

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa01LNT0454100.1	1	n+p1a	Resistance or Tolerance	Other soil stress tolerance	C161	R753
Osa01LNT0454100.1	1	n+s1a	Resistance or Tolerance	Other soil stress tolerance	C161	R753
Osa01LNT0454100.1	1	nan	Physiological trait	Eating quality	C161	R753
Osa01LNT0454100.1	1	yd1a	Morphological trait	Seed	R753	C161
Osa01LNT0454100.1	1	nan	Physiological trait	Eating quality	C161	R753
Osa01LNT0454100.1	1	nan	Physiological trait	Source activity	RG532	RG472

pre-miRNA

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

GWAS

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus