Transcript

Sequence

>Osa04LNT0494700.1

GAAAAAGCTGTCAAAAACAAAGTTGTAGAGCTCATTGAGATCTACCAATTTTATTTTGGTCATTTCTCCATCTGGGTTTAATAGAGCTATATAAAATTTGAATTTTAAAATATAAGAAATTCAAATATTTTTTCGGGTAGTAAATGATTTCAAATGGAAAAATTATCAACAATAAAGTTGTATAACTCATCAAGATCTATAACTTTTACTTTGGTCTTTTTTTC

Coding Potentia

Explanation	CPC Score
noncoding	-1.15583

Genome Browser

Expression

Axis x: Treatment
Axis y: FPKM
Value above bar: Standard deviation

Variation

Transcript ID	Chromosome	Locus	Ref	Alt

Transposon

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

small RNA targets

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End

QTL

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa04LNT0494700.1	4	qChla4-1	Morphological trait	Shoot/Seedling	C2807	RM241
Osa04LNT0494700.1	4	qChlab4-1	Morphological trait	Shoot/Seedling	C2807	RM241
Osa04LNT0494700.1	4	pss4.1	Physiological trait	Source activity	RZ740	RZ590
Osa04LNT0494700.1	4	qPH1-4-1	Morphological trait	Dwarf	RM241	C2807
Osa04LNT0494700.1	4	nan	Resistance or Tolerance	Other soil stress tolerance	RM5586	RM3916
Osa04LNT0494700.1	4	gpp4	Morphological trait	Seed	RZ569	RZ565

pre-miRNA

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

GWAS

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus