Transcript

Sequence

>Osa09LNT0582900.1

AATGTATGACGCCGTTGACTTTTTAAACAACGATTGACCATTCATTTTATTCAAAATTTTTTTTGTGTAAATATGAAAATATTTATGTTATGCTTTAAGAACATTTGATGATGAATCTAGTCATAATAAAATAAATAATAATTACATAAATTTTTTGAATAAGACGAATGGTCAAACGTTAGATAAAAAGTCAACGGCTTTATACATT

Coding Potentia

Explanation	CPC Score
noncoding	-1.28672

Genome Browser

Expression

Axis x: Treatment
Axis y: FPKM
Value above bar: Standard deviation

Variation

Transcript ID	Chromosome	Locus	Ref	Alt

Transposon

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

small RNA targets

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End

QTL

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa09LNT0582900.1	9	mrl9a	Resistance or Tolerance	Drought tolerance	RM201	RM410
Osa09LNT0582900.1	9	Symptoms	Resistance or Tolerance	Other disease resistance	RZ228	RG667
Osa09LNT0582900.1	9	Ta1	Morphological trait	Culm/leaf	RZ228	RG667
Osa09LNT0582900.1	9	qCCAI-9	Physiological trait	Source activity	RM257	RM201
Osa09LNT0582900.1	9	ta9	Morphological trait	Culm/leaf	RZ228	RZ12
Osa09LNT0582900.1	9	Ta	Morphological trait	Culm/leaf	RZ228	RG667
Osa09LNT0582900.1	9	Ta	Morphological trait	Culm/leaf	RZ228	RG667
Osa09LNT0582900.1	9	nan	Resistance or Tolerance	Other soil stress tolerance	R2638	C1263
Osa09LNT0582900.1	9	yldp9.1	Morphological trait	Seed	RM242	RM205
Osa09LNT0582900.1	9	gy9	Morphological trait	Seed	RM242	RM215

pre-miRNA

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

GWAS

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus