>Osa01LNT0460400.1

GATGACGCCATTGACCTTTTCTCACATGTTTGACCATTCGTCTTATTAAAAAAATTATGTAATTATAATTTATTTTGTCATGAGTTGTTTTATCACTCATAATATTTTAATATTTTAAGTGTGATTTATATCTTATACATTTGAATAAAATTTTTGAATAAAATGAATGGTCAAATATGTGAGAAAAAATCAACAGCGTCATC

Explanation	CPC Score
noncoding	-1.34787

Transcript ID	Chromosome	Locus	Ref	Alt

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa01LNT0460400.1	osa-miR5799	Translation	2.5	12.06	1	24
Osa01LNT0460400.1	osa-miR5831	Cleavage	4.5	13.308	1	24
Osa01LNT0460400.1	osa-miR812a	Cleavage	5.0	12.396	1	22
Osa01LNT0460400.1	osa-miR812b	Cleavage	5.0	12.396	1	22
Osa01LNT0460400.1	osa-miR812c	Cleavage	5.0	12.396	1	22
Osa01LNT0460400.1	osa-miR812d	Cleavage	5.0	12.396	1	22
Osa01LNT0460400.1	osa-miR812e	Cleavage	5.0	12.396	1	22

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa01LNT0460400.1	1	QPh1b	Resistance or Tolerance	Submergency tolerance	RZ527	RZ154
Osa01LNT0460400.1	1	nan	Physiological trait	Source activity	RG532	RM472
Osa01LNT0460400.1	1	nan	Morphological trait	Seed	CDO118	CDO455
Osa01LNT0460400.1	1	brt1d	Resistance or Tolerance	Drought tolerance	C742	C904
Osa01LNT0460400.1	1	rfw1b	Resistance or Tolerance	Drought tolerance	C813	C955
Osa01LNT0460400.1	1	yld1.1	Physiological trait	Source activity	RM5	RG462
Osa01LNT0460400.1	1	nan	Resistance or Tolerance	Salinity tolerance	RM1	R886
Osa01LNT0460400.1	1	nan	Resistance or Tolerance	Salinity tolerance	RM1	R886

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus