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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa06LNT0496900.1

TAACTCATATGAAAAAGTTACCAAAAACAAAGTTGTAGAACTCATCAAGATCTACAACTTTTATTTTGACCATTTTTCTATATGACTTTGTTTGAATAGTTTCAAATTGAATTTCAAAATATGACAACTTCAAACAAAATTTTCAAATAATAAATGATTTCAAATAGAAATGTCATCAACAACAAAGTGGTATAACTTATCAAGATCTACAACTTTTGTATTGGTCATTTTTCTATATGACTTT

Coding Potentia
Explanation CPC Score
noncoding -1.35165
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa06LNT0496900.1 6 nan Morphological trait Shoot/Seedling OSR19 RM225
Osa06LNT0496900.1 6 Qbph6 Resistance or Tolerance Insect resistance RM510 RM314
Osa06LNT0496900.1 6 AsTol Resistance or Tolerance Other soil stress tolerance RZ516 RG213
Osa06LNT0496900.1 6 alk6-1 Physiological trait Eating quality RM190 RM253
Osa06LNT0496900.1 6 Lhd1(t) Physiological trait Flowering nan nan
Osa06LNT0496900.1 6 En-Se1 Physiological trait Flowering nan nan
Osa06LNT0496900.1 6 hr6 Physiological trait Eating quality RM190 RM253
Osa06LNT0496900.1 6 d4 Morphological trait Dwarf nan nan
Osa06LNT0496900.1 6 nan Resistance or Tolerance Drought tolerance RM170 RM204
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus