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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa05LNT0308300.1

GAGATCGCGCGGTCTCGCACTGCCAAACAGCGACACCGTTTTGAAAAATAATTAATTAGTGATTAGTTGTCATGATTAAATATTAGTTAATTAATAATTGATGATTAATCATCCTAATTAGTGATTGATTAAAGCTCAGATAACAAGATAGCCGGTCTCGCTCAGCTGTTGTAGCTTTTCGGTTGTGCGAGACCGCTCGGTCTC

Coding Potentia
Explanation CPC Score
noncoding -1.45632
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
Osa05LNT0308300.1 DTM_#DNAt_MULE_japo_Os0230 Chr5 + 18969188 18969778 203
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa05LNT0308300.1 5 dcs5 Physiological trait Source activity RM440 RM430
Osa05LNT0308300.1 5 dcfs5 Physiological trait Source activity RM440 RM430
Osa05LNT0308300.1 5 nan Morphological trait Seed RG13 RG573
Osa05LNT0308300.1 5 QPl5 Morphological trait Panicle/flower RG13 RG346
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus