Transcript

Sequence

>Osa03LNT0472200.1

GAACTCATGTGAAAAAGTTGTCGAAAACAAAGTTGTATAACTCATTGAGATCTACCAATTTTATTTTGGTCATTTCTCCATCCGAGTTTGATTGAACTATATAAAACTTGAATTTTAAAATATAAGAAATTCAAATAATTTTTCGGGTAGTAAATGATTTCAAATGGAAAAGTTGTCAACTACAAAGTTGTATAACTTATTAAGATCTTCATCTTTTATTTTGGTCATTTTTATATATGACTTC

Coding Potentia

Explanation	CPC Score
noncoding	-1.18788

Genome Browser

Expression

Axis x: Treatment
Axis y: FPKM
Value above bar: Standard deviation

Variation

Transcript ID	Chromosome	Locus	Ref	Alt

Transposon

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

small RNA targets

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End

QTL

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa03LNT0472200.1	3	nan	Resistance or Tolerance	Drought tolerance	R1618	G164
Osa03LNT0472200.1	3	QFll3	Morphological trait	Culm/leaf	G249	RG418
Osa03LNT0472200.1	3	nan	Morphological trait	Panicle/flower	G249	RG418
Osa03LNT0472200.1	3	qSBR-3	Resistance or Tolerance	Sheath blight resistance	G249	G164
Osa03LNT0472200.1	3	QSn3	Morphological trait	Culm/leaf	G249	RG418
Osa03LNT0472200.1	3	qPES-3	Morphological trait	Panicle/flower	G249	G164

pre-miRNA

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

GWAS

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus