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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa02LNT0475200.1

GAACTCTAATGAAGACAAACTTTATATCAAACTTGTAGCCCTCGACACGATCTACAACTTTGTAGTTGAATTTTTTGTTATTTTAAGTCATTTTTTGTCCAAAAATATAATATTAAAATTAAAATTTCAAAATCTATAAACATGCAACAATATTTTGGGACCCTAAACAGTTTTAATTCAAAAACTTTTCAACTACAAAGTTATGATATAAAGTTTTCAATTTTGATATAAAGTTTGTCTTCATTAGAATTC

Coding Potentia
Explanation CPC Score
noncoding -1.04686
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
Osa02LNT0475200.1 DTM_#DNAt_MULE_japo_Os0089 Chr2 + 9051717 9052452 251
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa02LNT0475200.1 2 nan Resistance or Tolerance Drought tolerance RG83 RG171
Osa02LNT0475200.1 2 qPH-2 Morphological trait Dwarf RG324 RG83
Osa02LNT0475200.1 2 qLRS-2 Resistance or Tolerance Drought tolerance RM322 RM324
Osa02LNT0475200.1 2 qMRLd2 Resistance or Tolerance Other soil stress tolerance RZ324 R712
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus