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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa01LNT0454200.1

AATGTTATATAGAAAAATAACCAAAATAAAAGTTATAGATCTTGATGAGTTATACAACTTTGTTGTTGATGACTTTTTCAATTGAAGTCGTTCACTGATCTAAAATTCTATTTGAACTTTTCAAACTTTGAATTTTAAATTTCAAATTATTTAAATAGAGTCATATGGAGAAATAACCAAAATAAAAATTTTACACCTCGATGAGTTCTGCAACTTTGGTTTTGGTGACTTTTCCATTTGAAATC

Coding Potentia
Explanation CPC Score
noncoding -1.0187
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa01LNT0454200.1 osa-miR437 Cleavage 4.0 14.719 1 21
Osa01LNT0454200.1 osa-miR821a Cleavage 1.0 18.581 1 24
Osa01LNT0454200.1 osa-miR821a Translation 3.5 19.326 1 24
Osa01LNT0454200.1 osa-miR821b Cleavage 1.0 18.581 1 24
Osa01LNT0454200.1 osa-miR821b Translation 3.5 19.326 1 24
Osa01LNT0454200.1 osa-miR821c Cleavage 1.0 18.581 1 24
Osa01LNT0454200.1 osa-miR821c Translation 3.5 19.326 1 24
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa01LNT0454200.1 1 yd1a Morphological trait Seed R753 C161
Osa01LNT0454200.1 1 nan Physiological trait Eating quality C161 R753
Osa01LNT0454200.1 1 nan Physiological trait Eating quality C161 R753
Osa01LNT0454200.1 1 nan Physiological trait Source activity RG532 RG472
Osa01LNT0454200.1 1 n+p1a Resistance or Tolerance Other soil stress tolerance C161 R753
Osa01LNT0454200.1 1 n+s1a Resistance or Tolerance Other soil stress tolerance C161 R753
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus