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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa09LNT0581800.1

CCAAAAAAAAAAGGCAAACCCTGGGTTTGCGTGTCCAACTTTGACTGTCCGTCTTATATGAATTTTTTTTAAAATTTGTATTTTCATTGTTGTTAGATGATAAAACATGATTAATATTTTATGCGTGACTTGTCTTTTTAATTTTTTTCATAATTTTTTCAAATAAGACGGACGGTCAAACGTTGGGCACGGAAACCAGGGTTTGTCTTTTTTGGATGG

Coding Potentia
Explanation CPC Score
noncoding -1.18005
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa09LNT0581800.1 osa-miR812p Translation 2.0 16.997 1 24
Osa09LNT0581800.1 osa-miR812s Translation 3.0 14.787 1 24
Osa09LNT0581800.1 osa-miR5799 Translation 5.0 14.787 1 24
Osa09LNT0581800.1 osa-miR812a Cleavage 3.0 16.997 1 22
Osa09LNT0581800.1 osa-miR812b Cleavage 3.0 16.997 1 22
Osa09LNT0581800.1 osa-miR812c Cleavage 3.0 16.997 1 22
Osa09LNT0581800.1 osa-miR812d Cleavage 3.0 16.997 1 22
Osa09LNT0581800.1 osa-miR812e Cleavage 3.0 16.997 1 22
Osa09LNT0581800.1 osa-miR812f Cleavage 2.5 18.771 1 24
Osa09LNT0581800.1 osa-miR812g Translation 2.5 14.787 1 24
Osa09LNT0581800.1 osa-miR812h Translation 2.5 14.787 1 24
Osa09LNT0581800.1 osa-miR812i Translation 2.5 14.787 1 24
Osa09LNT0581800.1 osa-miR812j Translation 2.5 14.787 1 24
Osa09LNT0581800.1 osa-miR812k Cleavage 2.5 18.771 1 24
Osa09LNT0581800.1 osa-miR812l Cleavage 2.5 18.771 1 24
Osa09LNT0581800.1 osa-miR812m Cleavage 2.5 18.771 1 24
Osa09LNT0581800.1 osa-miR812o-5p Cleavage 1.5 18.387 1 21
Osa09LNT0581800.1 osa-miR812o-3p Cleavage 5.0 18.933 1 24
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa09LNT0581800.1 9 clr9 Resistance or Tolerance Cold tolerance RM285 RM434
Osa09LNT0581800.1 9 qAC9 Physiological trait Eating quality RM4413 RM5122
Osa09LNT0581800.1 9 qLG-9 Physiological trait Germination/dormancy G103 R1751
Osa09LNT0581800.1 9 rdw9 Resistance or Tolerance Drought tolerance R79 R2638
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus