>Osa11LNT0540200.1

AATGTATGGCGCTGTTGACTTTTTATTTAACGTTTAATCATTCGTCTTATTTAAAAATTTATGTAATTATTATTAATTTTATTATGACTTGATTCATCATTAAATGTTCTTTAAGCATGACATAAATATTTTCATATTTGCATAAAATTTTTGAATAAAATGAATGGTCAAATGTTGATTAAAAAGTCAACGGCATCATACATT

Explanation	CPC Score
noncoding	-1.08843

Transcript ID	Chromosome	Locus	Ref	Alt

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa11LNT0540200.1	osa-miR812s	Translation	3.5	8.349	1	24
Osa11LNT0540200.1	osa-miR5799	Translation	2.0	8.349	1	24
Osa11LNT0540200.1	osa-miR812a	Cleavage	3.0	8.108	1	22
Osa11LNT0540200.1	osa-miR812b	Cleavage	3.0	8.108	1	22
Osa11LNT0540200.1	osa-miR812c	Cleavage	3.0	8.108	1	22
Osa11LNT0540200.1	osa-miR812d	Cleavage	3.0	8.108	1	22
Osa11LNT0540200.1	osa-miR812e	Cleavage	3.0	8.108	1	22
Osa11LNT0540200.1	osa-miR812g	Cleavage	2.5	8.349	1	24
Osa11LNT0540200.1	osa-miR812h	Cleavage	2.5	8.349	1	24
Osa11LNT0540200.1	osa-miR812i	Cleavage	2.5	8.349	1	24
Osa11LNT0540200.1	osa-miR812j	Cleavage	2.5	8.349	1	24
Osa11LNT0540200.1	osa-miR812o-3p	Cleavage	5.0	7.281	1	24

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa11LNT0540200.1	11	nan	Morphological trait	Seed	RM332	RM229
Osa11LNT0540200.1	11	hbd3	Physiological trait	Lethality	nan	nan
Osa11LNT0540200.1	11	Hbd3	Physiological trait	Lethality	nan	nan
Osa11LNT0540200.1	11	elr11-1	Physiological trait	Eating quality	RM1812	RM209
Osa11LNT0540200.1	11	qDLR11	Resistance or Tolerance	Other soil stress tolerance	RM2596	RM286
Osa11LNT0540200.1	11	gw11.1	Resistance or Tolerance	Drought tolerance	RZ537	RZ900
Osa11LNT0540200.1	11	gpl11.1	Resistance or Tolerance	Drought tolerance	RZ537	RZ900
Osa11LNT0540200.1	11	yld11.1	Resistance or Tolerance	Drought tolerance	RZ537	RZ900

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus