Transcript

Sequence

>Osa01LNT0454400.1

CCTCTGTATTTTAAAATGTACGACATTGTTGACTTTTCGTTTAACGTTTGACCATTCATCTTATTTAAAAAATTTACGTAATTATTATTTATTTTATTGTGACTTGATTCATCATCAAAATGTTATTTAAGCATGACATAAATATTTTTATATTTTCAAAAAAAATTTTAAATAAAATAAATGATCAAACGTTGGACAAAAAGTCAATAGCGTCGTAAATTAAAATACGGAGG

Coding Potentia

Explanation	CPC Score
noncoding	-1.03637

Genome Browser

Expression

Axis x: Treatment
Axis y: FPKM
Value above bar: Standard deviation

Variation

Transcript ID	Chromosome	Locus	Ref	Alt

Transposon

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

small RNA targets

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa01LNT0454400.1	osa-miR812s	Translation	5.0	6.505	1	24
Osa01LNT0454400.1	osa-miR5799	Translation	3.5	6.505	1	24
Osa01LNT0454400.1	osa-miR443	Translation	4.0	9.803	1	22
Osa01LNT0454400.1	osa-miR812a	Cleavage	4.5	6.679	1	22
Osa01LNT0454400.1	osa-miR812b	Cleavage	4.5	6.679	1	22
Osa01LNT0454400.1	osa-miR812c	Cleavage	4.5	6.679	1	22
Osa01LNT0454400.1	osa-miR812d	Cleavage	4.5	6.679	1	22
Osa01LNT0454400.1	osa-miR812e	Cleavage	4.5	6.679	1	22
Osa01LNT0454400.1	osa-miR812o-5p	Cleavage	5.0	10.168	1	21
Osa01LNT0454400.1	osa-miR812o-3p	Cleavage	2.5	8.628	1	24

QTL

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa01LNT0454400.1	1	qFLL-1	Morphological trait	Culm/leaf	RZ543	RG532
Osa01LNT0454400.1	1	nan	Physiological trait	Source activity	RG532	RG472
Osa01LNT0454400.1	1	qFLP-1	Morphological trait	Culm/leaf	RZ543	RG532
Osa01LNT0454400.1	1	gp1a	Morphological trait	Panicle/flower	RM1	R753

pre-miRNA

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

GWAS

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus