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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa08LNT0558100.1

GAAAAAAATTGACAATGTAGAGTATAATGATACCTACTAGTTCATCAAAATTTAAGTTTAAATTTGATCTGCACATCGAGAAACAAAAAAAAGACAAATTTAGATATAAACAGTACGCTACTATTTATACGCTGAATTTATCTTTTTTATATCTCGACGTGTGAGTTGAGTTTGGACTTAAGATTTTGTGGAGTTGTATATATGTGTTGTATGAATGTTGTCAATTTTTTCC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.817916
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
Osa08LNT0558100.1 DTM_#DNAt_MULE_japo_Os0087 Chr8 + 27760743 27761125 231
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa08LNT0558100.1 osa-miR2873a Cleavage 2.5 13.833 1 24
Osa08LNT0558100.1 osa-miR2873b Cleavage 4.5 13.998 1 21
Osa08LNT0558100.1 osa-miR5153 Cleavage 5.0 22.617 1 24
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa08LNT0558100.1 8 nan Physiological trait Source activity RZ66 RG598
Osa08LNT0558100.1 8 qPGWC8 Physiological trait Eating quality nan nan
Osa08LNT0558100.1 8 qRGV-8 Physiological trait Germination/dormancy RM502 RM477
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus