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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa03LNT0463200.1

TATAAGGGATTTTGAGTTTTTGTTTTCAACGTTTGACCACTCGTCTTGATTAAAAAATTTTAAAATTATTATTTATTTAATTGTGACCTACTTTATTATCTACAGTACTTTAAGCATAATTTTTCGTTTTTTACATTTGAAAAAAAAATTTGAATAAGACGAGCGGTCAAACGTTGTAAGCAAAAACTCAAAATCCCTTATA

Coding Potentia
Explanation CPC Score
noncoding -1.14719
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa03LNT0463200.1 osa-miR812s Translation 4.5 10.752 1 24
Osa03LNT0463200.1 osa-miR5799 Translation 3.0 10.752 1 24
Osa03LNT0463200.1 osa-miR812a Cleavage 4.0 11.017 1 22
Osa03LNT0463200.1 osa-miR812b Cleavage 4.0 11.017 1 22
Osa03LNT0463200.1 osa-miR812c Cleavage 4.0 11.017 1 22
Osa03LNT0463200.1 osa-miR812d Cleavage 4.0 11.017 1 22
Osa03LNT0463200.1 osa-miR812e Cleavage 4.0 11.017 1 22
Osa03LNT0463200.1 osa-miR812o-5p Cleavage 5.0 10.967 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa03LNT0463200.1 3 qTAA3-1 Morphological trait Shoot/Seedling C316 C63
Osa03LNT0463200.1 3 Rhz2 Others Others OSR13 OSR16
Osa03LNT0463200.1 3 S34(t) Physiological trait Sterility nan nan
Osa03LNT0463200.1 3 qOE3-1 Physiological trait Eating quality nan nan
Osa03LNT0463200.1 3 qTA3 Physiological trait Eating quality nan nan
Osa03LNT0463200.1 3 qTNL-3 Morphological trait Culm/leaf C563 R518
Osa03LNT0463200.1 3 Gy3a Others Others RG266 C63
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus