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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa01LNT0454300.1

AATGTTATATAGAAAAATAACCAAAATAAAAGTTATAGATCTTGATGAGTTATACAACTTTGTTGTTGATGACTTTTTCAATTGAAGTCGTTCACTGATCTAAAATTCTATTTGAACTTTTCAAACTTTGAATTTTAAATTTCAAATTATTTAAATAGAGTCATATGGAGAAATAACCAAAATAAAAATTTTACACCTCGATGAGTTCTGCAACTTTGGTTTTGGTGACTTTTCCATTTGAAATC

Coding Potentia
Explanation CPC Score
noncoding -1.0187
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa01LNT0454300.1 osa-miR437 Cleavage 4.0 14.719 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa01LNT0454300.1 1 nan Physiological trait Source activity RG532 RG472
Osa01LNT0454300.1 1 n+p1a Resistance or Tolerance Other soil stress tolerance C161 R753
Osa01LNT0454300.1 1 n+s1a Resistance or Tolerance Other soil stress tolerance C161 R753
Osa01LNT0454300.1 1 nan Physiological trait Eating quality C161 R753
Osa01LNT0454300.1 1 yd1a Morphological trait Seed R753 C161
Osa01LNT0454300.1 1 nan Physiological trait Eating quality C161 R753
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus