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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa01LNT0456200.1

AAAGTCATATGGAAAAATGACCAAAATAAAAGTTGTAGATCTTGATAAGTTATACAACTTTGTTTTTTTACAATTTTTCCATTTGAAATCATTTACTACCCGAAGAATTATTTGAATTTATTATATTTTAAAATTCAAATTTTATATAGTTCAATGAAACTCGGATAGAGAAATGACCAAAATAAAATTAGTAGATCTTAATGAGTTCTGCAACTTTGTTTTTGACAATTTTCATATGAGTTC

Coding Potentia
Explanation CPC Score
noncoding -1.01041
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa01LNT0456200.1 osa-miR169p Cleavage 5.0 15.706 1 22
Osa01LNT0456200.1 osa-miR5157a-5p Translation 4.0 20.119 1 24
Osa01LNT0456200.1 osa-miR5157a-5p Translation 5.0 15.609 1 24
Osa01LNT0456200.1 osa-miR5157b-5p Translation 4.0 20.119 1 24
Osa01LNT0456200.1 osa-miR5157b-5p Translation 5.0 15.609 1 24
Osa01LNT0456200.1 osa-miR2275c Cleavage 2.5 21.796 1 23
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa01LNT0456200.1 1 nan Resistance or Tolerance Salinity tolerance RM1 R886
Osa01LNT0456200.1 1 nan Resistance or Tolerance Salinity tolerance RM1 RM5
Osa01LNT0456200.1 1 nan Physiological trait Source activity RG532 RM472
Osa01LNT0456200.1 1 rfw1b Resistance or Tolerance Drought tolerance C813 C955
Osa01LNT0456200.1 1 nan Morphological trait Root RM23 RM306
Osa01LNT0456200.1 1 nan Resistance or Tolerance Salinity tolerance RM1 R886
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus