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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa02LNT0480700.1

TTTAATGTATGACGCCGTTGACTTTTTAACCAATGTTTGACTACTCGTCTTATTCAAATTTTTTATGCAAATATAAAAATACTTATGTCATGTTTAAAGAACATTTGATGATAAATCAAGTCACAATAAAATAAATTATAATTACATAAATTTTTTGAATAAGACGAAATGTCGAACGTTTGTTAAAAAGTTAATGGCGTTATACATTAGGG

Coding Potentia
Explanation CPC Score
noncoding -1.01919
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa02LNT0480700.1 osa-miR812s Translation 4.0 9.904 1 24
Osa02LNT0480700.1 osa-miR5799 Translation 2.5 9.904 1 24
Osa02LNT0480700.1 osa-miR812a Cleavage 5.0 10.898 1 22
Osa02LNT0480700.1 osa-miR812b Cleavage 5.0 10.898 1 22
Osa02LNT0480700.1 osa-miR812c Cleavage 5.0 10.898 1 22
Osa02LNT0480700.1 osa-miR812d Cleavage 5.0 10.898 1 22
Osa02LNT0480700.1 osa-miR812e Cleavage 5.0 10.898 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa02LNT0480700.1 2 qRPA-2-c Resistance or Tolerance Other soil stress tolerance C424 G45
Osa02LNT0480700.1 2 Tiller number Morphological trait Culm/leaf R26 C424
Osa02LNT0480700.1 2 Sn2a Morphological trait Dwarf C424 G45
Osa02LNT0480700.1 2 qRTT2-1 Resistance or Tolerance Drought tolerance RG157 RZ318
Osa02LNT0480700.1 2 nan Others Others C424 G45
Osa02LNT0480700.1 2 nan Resistance or Tolerance Drought tolerance RG157 RZ318
Osa02LNT0480700.1 2 qPTD-2 Morphological trait Panicle/flower C424 G45
Osa02LNT0480700.1 2 qGRH-2 Resistance or Tolerance Insect resistance C621 C601
Osa02LNT0480700.1 2 qPH-2 Morphological trait Dwarf RG324 RG83
Osa02LNT0480700.1 2 qPN2 Morphological trait Culm/leaf RZ961 RZ401
Osa02LNT0480700.1 2 nan Resistance or Tolerance Insect resistance RG157 RZ318
Osa02LNT0480700.1 2 yld2.1 Morphological trait Seed RM262 RM263
Osa02LNT0480700.1 2 qSS-2 Physiological trait Sterility RM301 RM263
Osa02LNT0480700.1 2 qSB-2 Resistance or Tolerance Sheath blight resistance G45 RZ273
Osa02LNT0480700.1 2 nan Physiological trait Eating quality C621 C370
Osa02LNT0480700.1 2 qCSH2 Resistance or Tolerance Cold tolerance RM262 RM263
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus