>Osa04LNT0489700.1

TACTCCCTCCATATTTTACTGTATGACGTTGTTGACTTTTTAATCAACGTTTGACCATTCGTCTTAATCAAAAAATTTATGTAATTATCATTTATTTTATTGTCGTTTGATTTATCATCAAATATTCTTTAAGTATAACATAAATATTTTTATATTTGCACAAAAAAATTGAATAAGACAAATAGTCAAACGTTGTTCGAAAAGTCAACAGTGTCATATATTAAAATACAGAGGGAGTA

Explanation	CPC Score
noncoding	-1.46319

Transcript ID	Chromosome	Locus	Ref	Alt

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa04LNT0489700.1	osa-miR812s	Translation	3.5	11.074	1	24
Osa04LNT0489700.1	osa-miR5799	Translation	2.0	11.074	1	24
Osa04LNT0489700.1	osa-miR812a	Cleavage	2.5	10.04	1	22
Osa04LNT0489700.1	osa-miR812b	Cleavage	2.5	10.04	1	22
Osa04LNT0489700.1	osa-miR812c	Cleavage	2.5	10.04	1	22
Osa04LNT0489700.1	osa-miR812d	Cleavage	2.5	10.04	1	22
Osa04LNT0489700.1	osa-miR812e	Cleavage	2.5	10.04	1	22
Osa04LNT0489700.1	osa-miR1428e-3p	Translation	5.0	7.597	1	21
Osa04LNT0489700.1	osa-miR2874	Cleavage	5.0	9.524	1	24

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa04LNT0489700.1	4	gwt4a	Morphological trait	Seed	RG788	RG190
Osa04LNT0489700.1	4	gwt4a	Morphological trait	Seed	RG788	RG190
Osa04LNT0489700.1	4	spp4-2	Morphological trait	Panicle/flower	RG449	CDO456
Osa04LNT0489700.1	4	nan	Morphological trait	Panicle/flower	RG788	RZ69
Osa04LNT0489700.1	4	An8-glum	Morphological trait	Panicle/flower	nan	nan
Osa04LNT0489700.1	4	nan	Morphological trait	Root	RZ69	RG449
Osa04LNT0489700.1	4	nan	Morphological trait	Root	RZ69	RG449
Osa04LNT0489700.1	4	qCCFJ-4	Physiological trait	Source activity	RM261	RM3785

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus