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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa01LNT0462600.1

AATATTTGACGCCGTTGACTTTTTAAAAAATGTTTGATCGTTCGTCTTATTCAAAAATTTAAGTAATTATTAATTCTTTTTCTATCATTTGATTTATTGTTAAATATACTTTTATGTATACATATAGTTTTACACATTTCACAAATTTTTTTTGAATAAGGCGAACGGTCAAACATATTTAAAAAAGTCAACGGTGTCAAACATT

Coding Potentia
Explanation CPC Score
noncoding -1.36457
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa01LNT0462600.1 osa-miR812s Translation 2.0 6.443 1 24
Osa01LNT0462600.1 osa-miR5799 Translation 2.0 6.443 1 24
Osa01LNT0462600.1 osa-miR812a Cleavage 3.0 8.486 1 22
Osa01LNT0462600.1 osa-miR812b Cleavage 3.0 8.486 1 22
Osa01LNT0462600.1 osa-miR812c Cleavage 3.0 8.486 1 22
Osa01LNT0462600.1 osa-miR812d Cleavage 3.0 8.486 1 22
Osa01LNT0462600.1 osa-miR812e Cleavage 3.0 8.486 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa01LNT0462600.1 1 qRNd1 Resistance or Tolerance Other soil stress tolerance RG236 C86
Osa01LNT0462600.1 1 nan Morphological trait Root RM1387 RM1067
Osa01LNT0462600.1 1 ph1 Morphological trait Dwarf RG236 C547
Osa01LNT0462600.1 1 nan Resistance or Tolerance Other soil stress tolerance RG810 RG331
Osa01LNT0462600.1 1 nan Resistance or Tolerance Other soil stress tolerance RG810 RG331
Osa01LNT0462600.1 1 nan Resistance or Tolerance Other soil stress tolerance RG810 RG331
Osa01LNT0462600.1 1 fla1 Morphological trait Culm/leaf RG810 RG331
Osa01LNT0462600.1 1 nan Resistance or Tolerance Other disease resistance RG109 RG236
Osa01LNT0462600.1 1 nan Resistance or Tolerance Drought tolerance RZ14 R117
Osa01LNT0462600.1 1 qHID-1 Morphological trait Seed RG810 RG331
Osa01LNT0462600.1 1 qTGW-1 Morphological trait Seed RG810 RG331
Osa01LNT0462600.1 1 nan Physiological trait Eating quality RG331 RG810
Osa01LNT0462600.1 1 nan Resistance or Tolerance Drought tolerance RZ14 R117
Osa01LNT0462600.1 1 qPH1-1 Morphological trait Shoot/Seedling C86 RG236
Osa01LNT0462600.1 1 qBMS1-2 Physiological trait Source activity RZ801 RG331
Osa01LNT0462600.1 1 qHID1-2 Morphological trait Seed RZ801 RG331
Osa01LNT0462600.1 1 qTGW1-3 Morphological trait Seed RZ801 RG331
Osa01LNT0462600.1 1 rrw1b Resistance or Tolerance Other soil stress tolerance C86 RG236
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus