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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa03LNT0463400.1

AATAGATAATGCCGTTGACTTTTTATCACATGTTTGATCATTCGTCTTATTCAAAAAATTTACGTAATTATAATTTTTTTTGTTGTGAGTTGTTTTATCACTCAAAGTACTTTAAGCATGATTTATATATATACATTTACATAAAATTTTTTGAATATGACGAATGGTCAAACATATGTTTAAAAGTCAACGGCGTCATCTATT

Coding Potentia
Explanation CPC Score
noncoding -1.20932
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa03LNT0463400.1 osa-miR812s Translation 3.0 11.449 1 24
Osa03LNT0463400.1 osa-miR5799 Translation 1.5 11.449 1 24
Osa03LNT0463400.1 osa-miR5824 Cleavage 4.0 10.525 1 24
Osa03LNT0463400.1 osa-miR5340 Translation 4.5 13.009 1 23
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa03LNT0463400.1 3 S34(t) Physiological trait Sterility nan nan
Osa03LNT0463400.1 3 qOE3-1 Physiological trait Eating quality nan nan
Osa03LNT0463400.1 3 qTA3 Physiological trait Eating quality nan nan
Osa03LNT0463400.1 3 Gy3a Others Others RG266 C63
Osa03LNT0463400.1 3 qTAA3-1 Morphological trait Shoot/Seedling C316 C63
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus