Transcript

Sequence

>Osa08LNT0399800.1

CTCTCTCCGTATTTTAATGTATGACACCTTTGACTTTTCAAACAACGTTTGACCATTCATCTTATTCAAATTTTTTGTGCAAATATAAAAATATTTATGTTATACTTAAAGAATATTTGATAATAAATTAAGCCACAATAAAATAAATGATAATTACATAAATTTTTTGAATAAGATGAATAGTCAAACGTTGATTAAAAAGTCAACGGCATCATACATTAAAATATGGAAGGAG

Coding Potentia

Explanation	CPC Score
noncoding (weak)	-0.145289

Genome Browser

Expression

Axis x: Treatment
Axis y: FPKM
Value above bar: Standard deviation

Variation

Transcript ID	Chromosome	Locus	Ref	Alt

Transposon

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

small RNA targets

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa08LNT0399800.1	osa-miR5797	Cleavage	5.0	8.036	1	21
Osa08LNT0399800.1	osa-miR5799	Translation	3.5	10.146	1	24
Osa08LNT0399800.1	osa-miR812a	Cleavage	4.0	8.982	1	22
Osa08LNT0399800.1	osa-miR812b	Cleavage	4.0	8.982	1	22
Osa08LNT0399800.1	osa-miR812c	Cleavage	4.0	8.982	1	22
Osa08LNT0399800.1	osa-miR812d	Cleavage	4.0	8.982	1	22
Osa08LNT0399800.1	osa-miR812e	Cleavage	4.0	8.982	1	22
Osa08LNT0399800.1	osa-miR812o-5p	Cleavage	5.0	16.541	1	21

QTL

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa08LNT0399800.1	8	nan	Physiological trait	Flowering	C166	C1121
Osa08LNT0399800.1	8	nan	Resistance or Tolerance	Other soil stress tolerance	C390	C1121
Osa08LNT0399800.1	8	qDSR 8	Resistance or Tolerance	Other soil stress tolerance	RM3572	RM404
Osa08LNT0399800.1	8	qDTH8	Physiological trait	Flowering	R1943	R2976
Osa08LNT0399800.1	8	qPL8	Morphological trait	Panicle/flower	R1943	R2976
Osa08LNT0399800.1	8	qRRE-8	Resistance or Tolerance	Other soil stress tolerance	C166	C1121

pre-miRNA

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

GWAS

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus