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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa08LNT0403000.1

AATATTTGACGCCGTTGACTTTTTTAAACATGTTTGACCATTCGTCTTATTCAAAAACTTTTGTGAATATTATTCAAAAACTTGAGTAGTAGTAGTATATTTAACAATGAATCAATGATAGGAAAAGAATTAATAATTACTTAAATTTTTTGAATAAGACTAACTGTCAAACATATTTCAAAAAGTCAACGGCGTCAAATATT

Coding Potentia
Explanation CPC Score
noncoding -1.16137
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa08LNT0403000.1 osa-miR5799 Translation 2.5 9.845 1 24
Osa08LNT0403000.1 osa-miR812a Cleavage 5.0 9.741 1 22
Osa08LNT0403000.1 osa-miR812b Cleavage 5.0 9.741 1 22
Osa08LNT0403000.1 osa-miR812c Cleavage 5.0 9.741 1 22
Osa08LNT0403000.1 osa-miR812d Cleavage 5.0 9.741 1 22
Osa08LNT0403000.1 osa-miR812e Cleavage 5.0 9.741 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa08LNT0403000.1 8 qDSR 8 Resistance or Tolerance Other soil stress tolerance RM3572 RM404
Osa08LNT0403000.1 8 nfb8 Morphological trait Panicle/flower RG108 RZ562
Osa08LNT0403000.1 8 hd8 Physiological trait Flowering RZ562 RG978
Osa08LNT0403000.1 8 dth8 Physiological trait Flowering RG333 RZ66
Osa08LNT0403000.1 8 nfb8 Morphological trait Seed RG108 RZ562
Osa08LNT0403000.1 8 nan Resistance or Tolerance Drought tolerance RM72 RM331
Osa08LNT0403000.1 8 qALRR-8 Resistance or Tolerance Other soil stress tolerance RG978 C1121
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus