>Osa12LNT0559900.1

AATATTATATAGAAAAATGACCAAAATAAAAGTTGTAGATCTTGATGAGTTATACAACTTTGTTGTTGATGACTTTTTCAGTTGAAGTCGTTCACTGATCTAAAATTCTATTTGAACTTTTCAAAATTTGAATTTCAAATTTCAAATTGTTTAAATAGAGTCAGATGGAGAAATGACCAAAATAAAAATTTTGCACCTTGATGAGTTCTACAACTTTGGTTTTGGTGACTTTTCCATTTGAAATC

Explanation	CPC Score
noncoding	-1.03226

Transcript ID	Chromosome	Locus	Ref	Alt

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa12LNT0559900.1	osa-miR821a	Cleavage	1.0	22.571	1	24
Osa12LNT0559900.1	osa-miR821a	Translation	3.5	21.983	1	24
Osa12LNT0559900.1	osa-miR821b	Cleavage	1.0	22.571	1	24
Osa12LNT0559900.1	osa-miR821b	Translation	3.5	21.983	1	24
Osa12LNT0559900.1	osa-miR821c	Cleavage	1.0	22.571	1	24
Osa12LNT0559900.1	osa-miR821c	Translation	3.5	21.983	1	24
Osa12LNT0559900.1	osa-miR5157a-5p	Translation	4.5	14.523	1	24
Osa12LNT0559900.1	osa-miR5157b-5p	Translation	4.5	14.523	1	24

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa12LNT0559900.1	12	qCTS12	Resistance or Tolerance	Cold tolerance	RM5746	RM3103
Osa12LNT0559900.1	12	nan	Physiological trait	Eating quality	RM247	RM179
Osa12LNT0559900.1	12	rv12-2	Resistance or Tolerance	Drought tolerance	RM491	RM101
Osa12LNT0559900.1	12	nan	Resistance or Tolerance	Other soil stress tolerance	RG9	RG241
Osa12LNT0559900.1	12	qDLA-12-3	Resistance or Tolerance	Blast resistance	RG463	RZ816
Osa12LNT0559900.1	12	gy12	Morphological trait	Seed	RG869	RG98
Osa12LNT0559900.1	12	nan	Resistance or Tolerance	Other soil stress tolerance	RG9	RG241
Osa12LNT0559900.1	12	nan	Resistance or Tolerance	Other soil stress tolerance	RG9	RG241
Osa12LNT0559900.1	12	nan	Physiological trait	Eating quality	RM20	RM101

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus