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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa08LNT0554700.1

ACTCCCTCGGTCCTTTAATATATGACGCCGTTGATTTTTGTTACAAGTTTTGATCATTCGTTTTATTCAAAAATTTTGTGTAAATCTTAAAAATATAAATAATGCTTAAATTTCATTTAGTGTTAAATCAAGAAAAATATTTACTTAAATTTTTTGAATAAGACAAATGACCAAATATAATGTAAAAAGTCAATGACGTCATATATTAAAGGACGGAGGGAGT

Coding Potentia
Explanation CPC Score
noncoding -1.14704
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa08LNT0554700.1 osa-miR5799 Translation 3.5 10.719 1 24
Osa08LNT0554700.1 osa-miR1436 Cleavage 4.5 8.808 1 21
Osa08LNT0554700.1 osa-miR812f Cleavage 4.0 11.106 1 24
Osa08LNT0554700.1 osa-miR812g Cleavage 2.5 10.719 1 24
Osa08LNT0554700.1 osa-miR812h Cleavage 2.5 10.719 1 24
Osa08LNT0554700.1 osa-miR812i Cleavage 2.5 10.719 1 24
Osa08LNT0554700.1 osa-miR812j Cleavage 2.5 10.719 1 24
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa08LNT0554700.1 8 qCRE-8 Resistance or Tolerance Other soil stress tolerance R727 C347
Osa08LNT0554700.1 8 dth8 Physiological trait Flowering RG333 RZ66
Osa08LNT0554700.1 8 nan Resistance or Tolerance Drought tolerance RG978 RZ66
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus