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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa01LNT0454600.1

ACTCCCTCCGTATTTTAATGTATAACGCTGTTGACTTTTTGACCAACGTTTGACCACTCGTCTTATTCAAAATTTTTATGCAAATATAAAAATACTTATGTCTTGCTTAAAGAATATTTGATGATAAATCAAGTCACAATAAAATAAATTATAATTACATAAATTTTTTGAATAAAACGAAAGGTCAAACGTTTATAAAAAAGACAACGACGTCATACATTAAAATACGGAAGGAGT

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.492204
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa01LNT0454600.1 osa-miR5797 Cleavage 5.0 9.72 1 21
Osa01LNT0454600.1 osa-miR812s Translation 4.5 9.943 1 24
Osa01LNT0454600.1 osa-miR5799 Translation 3.0 9.943 1 24
Osa01LNT0454600.1 osa-miR812a Cleavage 4.0 9.331 1 22
Osa01LNT0454600.1 osa-miR812b Cleavage 4.0 9.331 1 22
Osa01LNT0454600.1 osa-miR812c Cleavage 4.0 9.331 1 22
Osa01LNT0454600.1 osa-miR812d Cleavage 4.0 9.331 1 22
Osa01LNT0454600.1 osa-miR812e Cleavage 4.0 9.331 1 22
Osa01LNT0454600.1 osa-miR1436 Translation 3.5 5.75 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa01LNT0454600.1 1 qFLL-1 Morphological trait Culm/leaf RZ543 RG532
Osa01LNT0454600.1 1 qFLP-1 Morphological trait Culm/leaf RZ543 RG532
Osa01LNT0454600.1 1 nan Morphological trait Root RM7383 RM243
Osa01LNT0454600.1 1 nan Morphological trait Root RM7383 RM23
Osa01LNT0454600.1 1 gp1a Morphological trait Panicle/flower RM1 R753
Osa01LNT0454600.1 1 nan Physiological trait Source activity RG532 RG472
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus