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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa06LNT0355700.1

TTTTAATGTATGACGCCATTGACTTTTTGTCTAACATTTGATCATTCGTCTTATTCAAGAAATTTATGTAATTATCATTTATTTTATTATGACTTGATTCGTTATCAAGTATTCTTTAAGCATGATATAAATATTTTTATATTTGCACAAAAATTTTGAATAAAACGAATGGTCAAACGCTGGTCGAAAAGTCAACAGCGTCATACATTAAAA

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.967911
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa06LNT0355700.1 osa-miR812p Cleavage 5.0 9.037 1 24
Osa06LNT0355700.1 osa-miR812s Translation 3.5 8.905 1 24
Osa06LNT0355700.1 osa-miR5799 Translation 2.0 8.905 1 24
Osa06LNT0355700.1 osa-miR5824 Cleavage 5.0 7.438 1 24
Osa06LNT0355700.1 osa-miR812a Cleavage 4.5 9.037 1 22
Osa06LNT0355700.1 osa-miR812b Cleavage 4.5 9.037 1 22
Osa06LNT0355700.1 osa-miR812c Cleavage 4.5 9.037 1 22
Osa06LNT0355700.1 osa-miR812d Cleavage 4.5 9.037 1 22
Osa06LNT0355700.1 osa-miR812e Cleavage 4.5 9.037 1 22
Osa06LNT0355700.1 osa-miR1428e-3p Translation 5.0 10.945 1 21
Osa06LNT0355700.1 osa-miR812f Cleavage 3.5 9.103 1 24
Osa06LNT0355700.1 osa-miR812g Cleavage 3.0 8.905 1 24
Osa06LNT0355700.1 osa-miR812h Cleavage 3.0 8.905 1 24
Osa06LNT0355700.1 osa-miR812i Cleavage 3.0 8.905 1 24
Osa06LNT0355700.1 osa-miR812j Cleavage 3.0 8.905 1 24
Osa06LNT0355700.1 osa-miR812k Cleavage 5.0 9.103 1 24
Osa06LNT0355700.1 osa-miR812l Cleavage 5.0 9.103 1 24
Osa06LNT0355700.1 osa-miR812m Cleavage 5.0 9.103 1 24
Osa06LNT0355700.1 osa-miR812o-3p Cleavage 2.0 9.088 1 24
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa06LNT0355700.1 6 nan Morphological trait Root RM4447 RM5509
Osa06LNT0355700.1 6 OVP1 Others Others nan nan
Osa06LNT0355700.1 6 ph6 Morphological trait Dwarf RZ667 RG653
Osa06LNT0355700.1 6 qLDLJ-6-1,2,3 Physiological trait Source activity RM217 RM3
Osa06LNT0355700.1 6 ppl6.1 Resistance or Tolerance Drought tolerance RM3 CDO78
Osa06LNT0355700.1 6 nan Resistance or Tolerance Blast resistance RG778 RZ682
Osa06LNT0355700.1 6 amy6-1 Physiological trait Eating quality RM3 RM217
Osa06LNT0355700.1 6 asv6-1 Physiological trait Eating quality RM3 RM217
Osa06LNT0355700.1 6 qREP-6 Resistance or Tolerance Other soil stress tolerance nan nan
Osa06LNT0355700.1 6 tgw6.1 Physiological trait Source activity RG264 RM3
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus