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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa09LNT0582200.1

TCCAGCCGCTCTCCTCAGATCCGCAGTACTCCCTCTGTTTCACAATGTAAGTCATTTTAGCATTTCTCACATTCATATTGATGTTAATGTTAATAAATCTAAATAGATATATATGTCTAGATTCATTAACATCAATATAAATTTGAGAAATACTAGAATGACTTATATTGTTAAACGGAGGGAGTAGCAAATTAACCAGCCGCA

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.436586
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa09LNT0582200.1 osa-miR5837.1 Cleavage 4.0 8.8 1 21
Osa09LNT0582200.1 osa-miR1436 Cleavage 3.0 8.47 1 21
Osa09LNT0582200.1 osa-miR1439 Cleavage 3.5 8.349 1 21
Osa09LNT0582200.1 osa-miR5161 Cleavage 4.0 7.451 1 20
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa09LNT0582200.1 9 qSB-9 Resistance or Tolerance Sheath blight resistance C472 R2638
Osa09LNT0582200.1 9 nan Morphological trait Panicle/flower RM257 RM566
Osa09LNT0582200.1 9 rdw9 Resistance or Tolerance Drought tolerance R79 R2638
Osa09LNT0582200.1 9 clr9 Resistance or Tolerance Cold tolerance RM285 RM434
Osa09LNT0582200.1 9 qAC9 Physiological trait Eating quality RM4413 RM5122
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus