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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa03LNT0463700.1

GATAACAACTAGGCCCGTCACAGATGACTCATCAGTGACGGGCTATATACTTAATCTCTATCGAGCATTAAGAGATATGTGTTATATATTATTCACAAATTTTACATATATGTGTTATAGTTTATAAAACCAGATAAGAGATATGTCAATTTTGTAAACAATGTTACTATCACTTTGTCGTATGAAGAAATGACCAAAATAAAAGTTTTAGATCTTGATGAGTTATTCAACTTTGTTGTGGATGACTTTTTCAATTGATATC

Coding Potentia
Explanation CPC Score
noncoding -1.00224
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa03LNT0463700.1 osa-miR160f-3p Cleavage 5.0 16.988 1 21
Osa03LNT0463700.1 osa-miR821a Translation 2.0 16.977 1 24
Osa03LNT0463700.1 osa-miR821b Translation 2.0 16.977 1 24
Osa03LNT0463700.1 osa-miR821c Translation 2.0 16.977 1 24
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa03LNT0463700.1 3 S34(t) Physiological trait Sterility nan nan
Osa03LNT0463700.1 3 qGW3 Morphological trait Seed C706 C12534S
Osa03LNT0463700.1 3 qOE3-1 Physiological trait Eating quality nan nan
Osa03LNT0463700.1 3 qTA3 Physiological trait Eating quality nan nan
Osa03LNT0463700.1 3 Gy3a Others Others RG266 C63
Osa03LNT0463700.1 3 qTAA3-1 Morphological trait Shoot/Seedling C316 C63
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus