>Osa04LNT0494400.1

TACATCCGTTTTTTAATAGATGACGCCGTTGATTTTTCTCACATGTTTGACCATTCGTCTTATTAAAAAATTTTATGCAAATGTATAAGATATAAATCACACTTAAAGTACTATGAGTGATAAAAGAACTCATAACAAAATAAATTATAATTACGTAAATTTTTTTGAATAAGACGAATGATCAAACATGTGAGAAAAAGTCAACAGCGTTATCTATTAAAAAATGGAGAGAGTA

Explanation	CPC Score
noncoding	-1.23798

Transcript ID	Chromosome	Locus	Ref	Alt

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa04LNT0494400.1	osa-miR5799	Translation	2.5	13.169	1	24
Osa04LNT0494400.1	osa-miR395u	Translation	5.0	10.181	1	21
Osa04LNT0494400.1	osa-miR812a	Cleavage	5.0	11.241	1	22
Osa04LNT0494400.1	osa-miR812b	Cleavage	5.0	11.241	1	22
Osa04LNT0494400.1	osa-miR812c	Cleavage	5.0	11.241	1	22
Osa04LNT0494400.1	osa-miR812d	Cleavage	5.0	11.241	1	22
Osa04LNT0494400.1	osa-miR812e	Cleavage	5.0	11.241	1	22
Osa04LNT0494400.1	osa-miR1442	Cleavage	3.5	13.844	1	20

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa04LNT0494400.1	4	qDLR4	Resistance or Tolerance	Other soil stress tolerance	RM3524	RM3866
Osa04LNT0494400.1	4	qDLR4	Resistance or Tolerance	Other soil stress tolerance	RM3524	RM3866
Osa04LNT0494400.1	4	d11	Morphological trait	Dwarf	nan	nan
Osa04LNT0494400.1	4	nan	Resistance or Tolerance	Other soil stress tolerance	RM5586	RM3916
Osa04LNT0494400.1	4	orl1	Morphological trait	Culm/leaf	S10628	C377
Osa04LNT0494400.1	4	nan	Morphological trait	Culm/leaf	RM3337	RM3785
Osa04LNT0494400.1	4	gpp4	Morphological trait	Seed	RZ569	RZ565
Osa04LNT0494400.1	4	qChla4-1	Morphological trait	Shoot/Seedling	C2807	RM241
Osa04LNT0494400.1	4	qCCFJ-4	Physiological trait	Source activity	RM261	RM3785
Osa04LNT0494400.1	4	qChlab4-1	Morphological trait	Shoot/Seedling	C2807	RM241
Osa04LNT0494400.1	4	qPH1-4-1	Morphological trait	Dwarf	RM241	C2807

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus