>Osa02LNT0480200.1

AATATTTGACACCGTTGACTTTTTAAAATATGTTTGACCGTTCGTCTTATTCAAAAAATTTAAGCAATTATTAATTCTTTTCCTACCATTTAATTCATTGTTAAATATACTTTTATGTATACATATAGTTTTACATATTTCACAAAAGTTTTTGAATAAGACGAACGGTCAAACATGTTTAAAAAAGTCAACGGCGTCAAACATT

Explanation	CPC Score
noncoding	-1.31361

Transcript ID	Chromosome	Locus	Ref	Alt

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa02LNT0480200.1	osa-miR812s	Translation	3.0	7.303	1	24
Osa02LNT0480200.1	osa-miR812a	Cleavage	3.5	7.975	1	22
Osa02LNT0480200.1	osa-miR812b	Cleavage	3.5	7.975	1	22
Osa02LNT0480200.1	osa-miR812c	Cleavage	3.5	7.975	1	22
Osa02LNT0480200.1	osa-miR812d	Cleavage	3.5	7.975	1	22
Osa02LNT0480200.1	osa-miR812e	Cleavage	3.5	7.975	1	22
Osa02LNT0480200.1	osa-miR2929	Translation	4.0	12.54	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa02LNT0480200.1	2	yld2.1	Morphological trait	Seed	RM262	RM263
Osa02LNT0480200.1	2	qSS-2	Physiological trait	Sterility	RM301	RM263
Osa02LNT0480200.1	2	qCSH2	Resistance or Tolerance	Cold tolerance	RM262	RM263
Osa02LNT0480200.1	2	Tiller number	Morphological trait	Culm/leaf	R26	C424
Osa02LNT0480200.1	2	qRTT2-1	Resistance or Tolerance	Drought tolerance	RG157	RZ318
Osa02LNT0480200.1	2	qPN2	Morphological trait	Culm/leaf	RZ961	RZ401
Osa02LNT0480200.1	2	nan	Resistance or Tolerance	Insect resistance	RG157	RZ318
Osa02LNT0480200.1	2	nan	Resistance or Tolerance	Drought tolerance	RG157	RZ318
Osa02LNT0480200.1	2	qPH-2	Morphological trait	Dwarf	RG324	RG83

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus