>Osa12LNT0567600.1

ACTCCCTCCGTATTTTAATGCATGACGCCGTTGACTTTTTTAGCAACGTTTGACCATTCGTTTTATTCAATTTTTTTGTGAAAATATGAAAATGTTTATGTCATGCTTAAAGAACATTTGATGATGAATCAAGTCACAATAAAATAAATGATAATTACATAAATTTTTTGAATAAGACGAACGGTCAAACGTTGGACAAAAAAATTAACGGCGTCATACATTAAAATATGGAGGTAGT

Explanation	CPC Score
noncoding (weak)	-0.584987

Transcript ID	Chromosome	Locus	Ref	Alt

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa12LNT0567600.1	osa-miR5797	Cleavage	5.0	10.433	1	21
Osa12LNT0567600.1	osa-miR812s	Translation	4.0	12.352	1	24
Osa12LNT0567600.1	osa-miR5799	Translation	2.5	12.352	1	24
Osa12LNT0567600.1	osa-miR812a	Cleavage	3.0	15.364	1	22
Osa12LNT0567600.1	osa-miR812b	Cleavage	3.0	15.364	1	22
Osa12LNT0567600.1	osa-miR812c	Cleavage	3.0	15.364	1	22
Osa12LNT0567600.1	osa-miR812d	Cleavage	3.0	15.364	1	22
Osa12LNT0567600.1	osa-miR812e	Cleavage	3.0	15.364	1	22
Osa12LNT0567600.1	osa-miR1436	Translation	4.5	18.353	1	21
Osa12LNT0567600.1	osa-miR812o-5p	Cleavage	3.5	11.215	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa12LNT0567600.1	12	qLEI 4	Resistance or Tolerance	Submergency tolerance	RM5479	C901
Osa12LNT0567600.1	12	nan	Resistance or Tolerance	Submergency tolerance	R1709	RM235
Osa12LNT0567600.1	12	nan	Resistance or Tolerance	Submergency tolerance	RM5479	RM6953
Osa12LNT0567600.1	12	qSD12	Physiological trait	Germination/dormancy	RM3331	RM235
Osa12LNT0567600.1	12	qLEI12	Resistance or Tolerance	Submergency tolerance	nan	nan
Osa12LNT0567600.1	12	qNEI12	Resistance or Tolerance	Submergency tolerance	nan	nan
Osa12LNT0567600.1	12	qTIL12	Resistance or Tolerance	Submergency tolerance	nan	nan

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus