>Osa03LNT0239500.1

TACTCCCTCCGTATTTTAATGTATGACGCCATTGACTTTTTAACCAACATTTGACCATTCGTCTTTTTTTTGTGCAAATATGAAAATATTTATGTCATGCTTAAAGATTTTTCGATGATAAATTAAGTCACAATAAAATAAATGATAATTATAGAAATTTTTTGAATAAGACGAATGGTCAAACGTTAATTAAAAAGTCAACAGCGTCATACATTAAAATACGGAGGGAGTA

Explanation	CPC Score
noncoding (weak)	-0.375311

Transcript ID	Chromosome	Locus	Ref	Alt

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa03LNT0239500.1	osa-miR812s	Translation	4.5	9.862	1	24
Osa03LNT0239500.1	osa-miR5799	Translation	3.0	9.862	1	24
Osa03LNT0239500.1	osa-miR812a	Cleavage	3.5	11.04	1	22
Osa03LNT0239500.1	osa-miR812b	Cleavage	3.5	11.04	1	22
Osa03LNT0239500.1	osa-miR812c	Cleavage	3.5	11.04	1	22
Osa03LNT0239500.1	osa-miR812d	Cleavage	3.5	11.04	1	22
Osa03LNT0239500.1	osa-miR812e	Cleavage	3.5	11.04	1	22
Osa03LNT0239500.1	osa-miR1436	Translation	3.5	7.801	1	21
Osa03LNT0239500.1	osa-miR812o-3p	Cleavage	4.5	9.755	1	24

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa03LNT0239500.1	3	nan	Morphological trait	Panicle/flower	G249	RG418
Osa03LNT0239500.1	3	qSBR-3	Resistance or Tolerance	Sheath blight resistance	G249	G164
Osa03LNT0239500.1	3	qPES-3	Morphological trait	Panicle/flower	G249	G164
Osa03LNT0239500.1	3	QFll3	Morphological trait	Culm/leaf	G249	RG418
Osa03LNT0239500.1	3	QSn3	Morphological trait	Culm/leaf	G249	RG418
Osa03LNT0239500.1	3	nan	Resistance or Tolerance	Drought tolerance	R1618	G164
Osa03LNT0239500.1	3	Qbp1	Resistance or Tolerance	Insect resistance	R1925	R2443

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus