Transcript

Sequence

>Osa11LNT0543300.1

GGCTTCATGTGAAGGATGTTTTTATACTCCCTCCGTTTCATAATATAAAACTTTCTAGTATTGTTCATATTTATATAAATGCTAATGAATCTAGACACATATATATATATATCTAGATTATGTGTCTAGATTCATTAACATTTATATAAATGTGGACAATAATAAAAAGTCTTACATTATGAAACAGAGGAAGTATGAGTTAATGATTTTAGTGGATACC

Coding Potentia

Explanation	CPC Score
noncoding (weak)	-0.509954

Genome Browser

Expression

Axis x: Treatment
Axis y: FPKM
Value above bar: Standard deviation

Variation

Transcript ID	Chromosome	Locus	Ref	Alt

Transposon

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

small RNA targets

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa11LNT0543300.1	osa-miR1436	Cleavage	2.5	10.897	1	21
Osa11LNT0543300.1	osa-miR1439	Cleavage	3.0	10.346	1	21
Osa11LNT0543300.1	osa-miR5161	Translation	4.5	8.543	1	20

QTL

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa11LNT0543300.1	11	qDLR11	Resistance or Tolerance	Other soil stress tolerance	RM2596	RM286
Osa11LNT0543300.1	11	Xa21	Resistance or Tolerance	Bacterial blight resistance	CDO534	RZ537
Osa11LNT0543300.1	11	gw11.1	Resistance or Tolerance	Drought tolerance	RZ537	RZ900
Osa11LNT0543300.1	11	chs	Others	Others	nan	nan
Osa11LNT0543300.1	11	gpl11.1	Resistance or Tolerance	Drought tolerance	RZ537	RZ900
Osa11LNT0543300.1	11	yld11.1	Resistance or Tolerance	Drought tolerance	RZ537	RZ900

pre-miRNA

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

GWAS

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus