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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa01LNT0459500.1

TACCACCTCCATATTTTAATATATGACGCCGTTAACTTTTTGTCCAATGTTTGACCATTCGTTTTATTCAAAAAATTTATATAATTATTATTTATTTTATTATGACTTGATGACGTCAAATTGTTCTTTAAGCATGACATAAATATTTTCATATTTACACCAAAAATTTGAATAAAACGAATGATCAAACGTTGGTTGAAAAGTCAACGGCGTCATATATTAAAATACGGAGGGAGTA

Coding Potentia
Explanation CPC Score
noncoding -1.10513
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa01LNT0459500.1 osa-miR812s Translation 4.5 5.785 1 24
Osa01LNT0459500.1 osa-miR5799 Translation 3.0 5.785 1 24
Osa01LNT0459500.1 osa-miR6248 Translation 4.5 6.576 1 21
Osa01LNT0459500.1 osa-miR812a Cleavage 3.5 5.814 1 22
Osa01LNT0459500.1 osa-miR812b Cleavage 3.5 5.814 1 22
Osa01LNT0459500.1 osa-miR812c Cleavage 3.5 5.814 1 22
Osa01LNT0459500.1 osa-miR812d Cleavage 3.5 5.814 1 22
Osa01LNT0459500.1 osa-miR812e Cleavage 3.5 5.814 1 22
Osa01LNT0459500.1 osa-miR812g Translation 5.0 5.785 1 24
Osa01LNT0459500.1 osa-miR812h Translation 5.0 5.785 1 24
Osa01LNT0459500.1 osa-miR812i Translation 5.0 5.785 1 24
Osa01LNT0459500.1 osa-miR812j Translation 5.0 5.785 1 24
Osa01LNT0459500.1 osa-miR812k Cleavage 4.5 6.132 1 24
Osa01LNT0459500.1 osa-miR812l Cleavage 4.5 6.132 1 24
Osa01LNT0459500.1 osa-miR812m Cleavage 4.5 6.132 1 24
Osa01LNT0459500.1 osa-miR812o-3p Cleavage 3.5 9.238 1 24
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa01LNT0459500.1 1 nan Morphological trait Panicle/flower CDO920 RZ776
Osa01LNT0459500.1 1 nan Resistance or Tolerance Drought tolerance BCD134 RZ776
Osa01LNT0459500.1 1 nan Physiological trait Source activity RG532 RM472
Osa01LNT0459500.1 1 qVB-1 Morphological trait Culm/leaf RZ776 RZ744
Osa01LNT0459500.1 1 qVB-1 Morphological trait Culm/leaf RZ776 RZ744
Osa01LNT0459500.1 1 brt1d Resistance or Tolerance Drought tolerance C742 C904
Osa01LNT0459500.1 1 rfw1b Resistance or Tolerance Drought tolerance C813 C955
Osa01LNT0459500.1 1 nan Resistance or Tolerance Drought tolerance RM129 RM5
Osa01LNT0459500.1 1 nan Morphological trait Root RM23 RM306
Osa01LNT0459500.1 1 nan Resistance or Tolerance Salinity tolerance RM1 R886
Osa01LNT0459500.1 1 nan Resistance or Tolerance Salinity tolerance RM1 R886
Osa01LNT0459500.1 1 nan Resistance or Tolerance Salinity tolerance RM1 RM5
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus