>Osa02LNT0474500.1

ACTCCCTCCGTATTTTAATGTATGACGCCGTTGACTTTTCGACCAACGTTTGACCATTTGTTTTATTCGAAATTTTTATGCAAATATGAAAATATTTATGTCATGCTTAAAGAACATTTGATGACGAATCAAGTCATAATAAAATAAATGATAATTACATAAATTTTCTGAATAAGACGAATGGTCAAATGTTGGACAAAAAAATCAACGGCGTCATATATTAAAATATGGAGATAGT

Explanation	CPC Score
noncoding (weak)	-0.640564

Transcript ID	Chromosome	Locus	Ref	Alt

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa02LNT0474500.1	osa-miR5797	Cleavage	5.0	10.207	1	21
Osa02LNT0474500.1	osa-miR812s	Translation	4.5	12.011	1	24
Osa02LNT0474500.1	osa-miR5799	Translation	3.0	12.011	1	24
Osa02LNT0474500.1	osa-miR812a	Cleavage	3.5	16.012	1	22
Osa02LNT0474500.1	osa-miR812b	Cleavage	3.5	16.012	1	22
Osa02LNT0474500.1	osa-miR812c	Cleavage	3.5	16.012	1	22
Osa02LNT0474500.1	osa-miR812d	Cleavage	3.5	16.012	1	22
Osa02LNT0474500.1	osa-miR812e	Cleavage	3.5	16.012	1	22
Osa02LNT0474500.1	osa-miR1436	Translation	3.5	16.07	1	21
Osa02LNT0474500.1	osa-miR812o-5p	Cleavage	4.5	11.45	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa02LNT0474500.1	2	nan	Resistance or Tolerance	Drought tolerance	RG83	RG171
Osa02LNT0474500.1	2	qLER-2	Morphological trait	Culm/leaf	R2344	R712
Osa02LNT0474500.1	2	qPH-2	Morphological trait	Dwarf	RG324	RG83
Osa02LNT0474500.1	2	qEML-2	Morphological trait	Seed	R2344	R712

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus