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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa06LNT0510200.1

TACAACCTCCAAATTTAAATATATGACGCCGTTGACTTTTTGTTCAACGTTTGACCATTCGTCTTATTCAAAAAATTTATGTAATTATCATTTATTTTATTGTGGATTGATTCGTCATCAAATATTCTTTAAGCATGACATAAATATTTTGATATTTGCACAAAAATTTGAATAAAACGAATGGTCAAACGTTGGTCGAAAAGTCAACGGCGTCATACATTAAAATACGGATGGAGTA

Coding Potentia
Explanation CPC Score
noncoding -1.02275
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa06LNT0510200.1 osa-miR812s Translation 3.5 12.166 1 24
Osa06LNT0510200.1 osa-miR5799 Translation 2.0 12.166 1 24
Osa06LNT0510200.1 osa-miR6248 Translation 4.0 8.934 1 21
Osa06LNT0510200.1 osa-miR443 Translation 4.5 16.788 1 22
Osa06LNT0510200.1 osa-miR812a Cleavage 2.5 12.194 1 22
Osa06LNT0510200.1 osa-miR812b Cleavage 2.5 12.194 1 22
Osa06LNT0510200.1 osa-miR812c Cleavage 2.5 12.194 1 22
Osa06LNT0510200.1 osa-miR812d Cleavage 2.5 12.194 1 22
Osa06LNT0510200.1 osa-miR812e Cleavage 2.5 12.194 1 22
Osa06LNT0510200.1 osa-miR1428e-3p Translation 5.0 12.554 1 21
Osa06LNT0510200.1 osa-miR812g Translation 4.0 12.166 1 24
Osa06LNT0510200.1 osa-miR812h Translation 4.0 12.166 1 24
Osa06LNT0510200.1 osa-miR812i Translation 4.0 12.166 1 24
Osa06LNT0510200.1 osa-miR812j Translation 4.0 12.166 1 24
Osa06LNT0510200.1 osa-miR812k Cleavage 4.5 12.807 1 24
Osa06LNT0510200.1 osa-miR812l Cleavage 4.5 12.807 1 24
Osa06LNT0510200.1 osa-miR812m Cleavage 4.5 12.807 1 24
Osa06LNT0510200.1 osa-miR812o-3p Cleavage 3.5 14.78 1 24
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa06LNT0510200.1 6 qLDLJ-6-1,2,3 Physiological trait Source activity RM217 RM3
Osa06LNT0510200.1 6 gw6 Morphological trait Panicle/flower RG424 R2549
Osa06LNT0510200.1 6 RPLD4 Physiological trait Eating quality RG424 RG172
Osa06LNT0510200.1 6 nan Physiological trait Eating quality RM253 RM162
Osa06LNT0510200.1 6 amy6-1 Physiological trait Eating quality RM3 RM217
Osa06LNT0510200.1 6 asv6-1 Physiological trait Eating quality RM3 RM217
Osa06LNT0510200.1 6 tgw6.1 Physiological trait Source activity RG264 RM3
Osa06LNT0510200.1 6 ph6 Morphological trait Dwarf RZ667 RG653
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus