Transcript

Sequence

>Osa12LNT0566800.1

ACTCCCTCCGTATTTTAATGTATGACACCGTTGACTCTTCGAACAACGTTTGACCATTCGTCTTATTCAAATTTTTTGTTTAAATATAAAAATATTTATGTTATACTTAAAGAATATTTGATAATAAATCAAGCCACAATAAAATAAATGATAATTACATAAATTTTTTGAATAAGACGAATGGTCAAACGTTGATTAAAAAGTTAACTGCGTCATATATTAAAATATGGAGGGAGT

Coding Potentia

Explanation	CPC Score
noncoding (weak)	-0.202667

Genome Browser

Expression

Axis x: Treatment
Axis y: FPKM
Value above bar: Standard deviation

Variation

Transcript ID	Chromosome	Locus	Ref	Alt

Transposon

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

small RNA targets

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa12LNT0566800.1	osa-miR812s	Translation	3.5	10.948	1	24
Osa12LNT0566800.1	osa-miR5799	Translation	2.0	10.948	1	24
Osa12LNT0566800.1	osa-miR812a	Cleavage	2.5	11.788	1	22
Osa12LNT0566800.1	osa-miR812b	Cleavage	2.5	11.788	1	22
Osa12LNT0566800.1	osa-miR812c	Cleavage	2.5	11.788	1	22
Osa12LNT0566800.1	osa-miR812d	Cleavage	2.5	11.788	1	22
Osa12LNT0566800.1	osa-miR812e	Cleavage	2.5	11.788	1	22
Osa12LNT0566800.1	osa-miR1436	Translation	3.5	10.968	1	21
Osa12LNT0566800.1	osa-miR5797	Cleavage	5.0	8.423	1	21

QTL

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa12LNT0566800.1	12	nan	Resistance or Tolerance	Submergency tolerance	R1709	RM235
Osa12LNT0566800.1	12	qSD12	Physiological trait	Germination/dormancy	RM3331	RM235
Osa12LNT0566800.1	12	qDLA-12-3	Resistance or Tolerance	Blast resistance	RG463	RZ816

pre-miRNA

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

GWAS

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus