Transcript

Sequence

>Osa08LNT0557900.1

GGTGCAGCCAGATCAATAGTAGCAGTAGCAGCTACTTCCTCCGTTTCACAATATAAGTCATTCTAACATTTTCCCTATTTATATTTATGTTAATGAATATATATATATATATGTGTGTGTCTAGATTCATTAACATCAATATGAATGTGGGAAATGCTAGAATGACTTACATTGTGAAACGGGGGATCCGAGTAGCTAGCAAGGCAGCTAGTGCTGATAACGCTGTACC

Coding Potentia

Explanation	CPC Score
noncoding	-1.50393

Genome Browser

Expression

Axis x: Treatment
Axis y: FPKM
Value above bar: Standard deviation

Variation

Transcript ID	Chromosome	Locus	Ref	Alt

Transposon

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts
Osa08LNT0557900.1	DTM_#DNAt_MULE_japo_Os0229	Chr8	-	26724667	26740978	228

small RNA targets

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa08LNT0557900.1	osa-miR5837.1	Cleavage	4.0	17.509	1	21
Osa08LNT0557900.1	osa-miR818a	Cleavage	5.0	8.804	1	22
Osa08LNT0557900.1	osa-miR818b	Cleavage	5.0	8.804	1	22
Osa08LNT0557900.1	osa-miR818c	Cleavage	5.0	8.804	1	22
Osa08LNT0557900.1	osa-miR818d	Cleavage	5.0	8.804	1	22
Osa08LNT0557900.1	osa-miR818e	Cleavage	5.0	8.804	1	22
Osa08LNT0557900.1	osa-miR1436	Cleavage	4.5	11.316	1	21
Osa08LNT0557900.1	osa-miR1439	Cleavage	3.5	11.312	1	21

QTL

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa08LNT0557900.1	8	nan	Physiological trait	Source activity	RZ66	RG598
Osa08LNT0557900.1	8	Grh5	Resistance or Tolerance	Insect resistance	nan	nan
Osa08LNT0557900.1	8	qPGWC8	Physiological trait	Eating quality	nan	nan
Osa08LNT0557900.1	8	Grh5	Resistance or Tolerance	Insect resistance	nan	nan
Osa08LNT0557900.1	8	qRGV-8	Physiological trait	Germination/dormancy	RM502	RM477

pre-miRNA

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

GWAS

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus