Transcript

Sequence

>Osa07LNT0529300.1

AATAGATAACGCCGTTAATTTTTTCTCACATGTTTGACCATTCGTCTTATTCAAAAAATTTACGTAATTATAATTTATTTTGTTATGTTGTTTTATCACTTATAATACTTTAAGTGTGATTTATATCTTATACATTTGCATAAAATTTTTGAATAAGACGAATGGTCAAACATGTGAGAAAAAGTCAACGGCGTTATCTATT

Coding Potentia

Explanation	CPC Score
noncoding	-1.18938

Genome Browser

Expression

Axis x: Treatment
Axis y: FPKM
Value above bar: Standard deviation

Variation

Transcript ID	Chromosome	Locus	Ref	Alt

Transposon

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

small RNA targets

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa07LNT0529300.1	osa-miR5799	Translation	2.5	5.681	1	24
Osa07LNT0529300.1	osa-miR812a	Cleavage	5.0	5.694	1	22
Osa07LNT0529300.1	osa-miR812b	Cleavage	5.0	5.694	1	22
Osa07LNT0529300.1	osa-miR812c	Cleavage	5.0	5.694	1	22
Osa07LNT0529300.1	osa-miR812d	Cleavage	5.0	5.694	1	22
Osa07LNT0529300.1	osa-miR812e	Cleavage	5.0	5.694	1	22

QTL

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa07LNT0529300.1	7	qHd-7	Physiological trait	Flowering	RM125	RM432
Osa07LNT0529300.1	7	qLTG-7	Resistance or Tolerance	Cold tolerance	R1440	R1357
Osa07LNT0529300.1	7	QRl7	Morphological trait	Culm/leaf	CDO497	CDO385
Osa07LNT0529300.1	7	qLTG-7	Physiological trait	Germination/dormancy	R1440	R1357
Osa07LNT0529300.1	7	nan	Resistance or Tolerance	Insect resistance	RG773	CDO59
Osa07LNT0529300.1	7	dth7.1	Physiological trait	Flowering	RM125	RM336
Osa07LNT0529300.1	7	sp2(t)	Morphological trait	Panicle/flower	nan	nan

pre-miRNA

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

GWAS

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus