\
RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa01LNT0461100.1

TAGTACTCCCTCCGGTTCAAGATGTTTGACACAGTTGACTTTTTAGCACATGTTTGACCGTTCGTCTTATTAAAAAAAACTTTGTGAAATATGTAAAATTATATGTGTACATGAAAGTATATTTAACAATGAATAATTACTTAAATTTTTTGAATAAGACGAATAATCAAACACGTATTAAAAAGTCAACGGTGATAAACATTTTGAAACGGAGGGAGTACTA

Coding Potentia
Explanation CPC Score
noncoding -1.30999
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa01LNT0461100.1 osa-miR812s Translation 3.0 11.447 1 24
Osa01LNT0461100.1 osa-miR159f Translation 4.5 11.488 1 21
Osa01LNT0461100.1 osa-miR812a Cleavage 3.5 11.814 1 22
Osa01LNT0461100.1 osa-miR812b Cleavage 3.5 11.814 1 22
Osa01LNT0461100.1 osa-miR812c Cleavage 3.5 11.814 1 22
Osa01LNT0461100.1 osa-miR812d Cleavage 3.5 11.814 1 22
Osa01LNT0461100.1 osa-miR812e Cleavage 3.5 11.814 1 22
Osa01LNT0461100.1 osa-miR1436 Translation 4.0 11.488 1 21
Osa01LNT0461100.1 osa-miR1439 Cleavage 3.0 11.488 1 21
Osa01LNT0461100.1 osa-miR5161 Translation 5.0 11.488 1 20
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa01LNT0461100.1 1 qLRC-1 Resistance or Tolerance Drought tolerance RM237 RM302
Osa01LNT0461100.1 1 An10 Morphological trait Panicle/flower nan nan
Osa01LNT0461100.1 1 nan Physiological trait Source activity RG532 RM472
Osa01LNT0461100.1 1 qHUS-1-2 Others Others RM246 RG101
Osa01LNT0461100.1 1 rfw1b Resistance or Tolerance Drought tolerance C813 C955
Osa01LNT0461100.1 1 brt1d Resistance or Tolerance Drought tolerance C742 C904
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus