>Osa04LNT0488700.1

AACTCTAATGAAGACAAACTTTATATTAAAATTGTAGCCCGCGACACGACCTATAAATTTCTAGTTGAAAAGTTTTTGAATTAAAACTGTTTAGGGTCCCAAAATATTGTTGCATGTTTATAGATTTTGAAATTTAAATTTTAAAATTACATTTTGGGACAAAAAATGACTTAAAATAAAAAAAAATCAACTTTATAAGTTGTAGATCGTGTCGAGGGCTACAAGTTTGATATAAAGTTTGTCTTCATTAGTGTG

Explanation	CPC Score
noncoding	-1.3643

Transcript ID	Chromosome	Locus	Ref	Alt

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts
Osa04LNT0488700.1	DTM_#DNAt_MULE_japo_Os0089	Chr4	-	12616691	12622168	254

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa04LNT0488700.1	osa-miR1862f	Cleavage	3.5	12.537	1	20
Osa04LNT0488700.1	osa-miR1862g	Cleavage	3.5	12.537	1	20

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa04LNT0488700.1	4	qCCFJ-4	Physiological trait	Source activity	RM261	RM3785
Osa04LNT0488700.1	4	qSNP-4a	Morphological trait	Panicle/flower	RM401	RM335
Osa04LNT0488700.1	4	gwt4a	Morphological trait	Seed	RG788	RG190
Osa04LNT0488700.1	4	An8-glum	Morphological trait	Panicle/flower	nan	nan
Osa04LNT0488700.1	4	spp4-2	Morphological trait	Panicle/flower	RG449	CDO456
Osa04LNT0488700.1	4	qPEN-4	Morphological trait	Panicle/flower	RG190	RG908
Osa04LNT0488700.1	4	gwt4a	Morphological trait	Seed	RG788	RG190
Osa04LNT0488700.1	4	nan	Morphological trait	Panicle/flower	RG788	RZ69
Osa04LNT0488700.1	4	nan	Morphological trait	Root	RZ69	RG449
Osa04LNT0488700.1	4	nan	Morphological trait	Root	RZ69	RG449

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus