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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa12LNT0566700.1

ACTCCCTCCGTTTCGAAATGTTCGACGCCGTTGACTTTTTTTTTTTTCACATGTTTGACCGTTTGTCTTATTTAAAAAATTTAAGTAATTGTTAAATATATTTTTATGTAGGCATATAATTTTATATATTTCACAAAATTTTTTGAATAAGACGAACGGTTAAATATGTACTAAAAAGTCAACGGTGTCAAATATTTCGAAACGGAGGGAGT

Coding Potentia
Explanation CPC Score
noncoding -1.04809
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa12LNT0566700.1 osa-miR812a Cleavage 4.0 8.858 1 22
Osa12LNT0566700.1 osa-miR812b Cleavage 4.0 8.858 1 22
Osa12LNT0566700.1 osa-miR812c Cleavage 4.0 8.858 1 22
Osa12LNT0566700.1 osa-miR812d Cleavage 4.0 8.858 1 22
Osa12LNT0566700.1 osa-miR812e Cleavage 4.0 8.858 1 22
Osa12LNT0566700.1 osa-miR1436 Cleavage 3.0 6.921 1 21
Osa12LNT0566700.1 osa-miR812o-3p Cleavage 4.5 8.134 1 24
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa12LNT0566700.1 12 qDLA-12-3 Resistance or Tolerance Blast resistance RG463 RZ816
Osa12LNT0566700.1 12 nan Resistance or Tolerance Submergency tolerance R1709 RM235
Osa12LNT0566700.1 12 qSD12 Physiological trait Germination/dormancy RM3331 RM235
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus