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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa04LNT0484500.1

CCTCCGTTTTTTAATAGATGACGCCGTTGACTTTTTCTCACATGTTTGACCATTCGTCTTATTCAAAAAATTTACATAATTATAATTTATTTTGTGATGAGTTGTTATATCACTCATAATACTTTAAGTGTGATTTATATCTTATACATTTGCATAAAATTTTTGAATAAGATGAATGGTTAAACATGTGAGAAAAAGTCAACGGCGTTATCTATTAAAAAACGGAGG

Coding Potentia
Explanation CPC Score
noncoding -1.20007
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa04LNT0484500.1 osa-miR5799 Translation 2.5 7.715 1 24
Osa04LNT0484500.1 osa-miR5824 Cleavage 5.0 9.686 1 24
Osa04LNT0484500.1 osa-miR812a Cleavage 5.0 8.425 1 22
Osa04LNT0484500.1 osa-miR812b Cleavage 5.0 8.425 1 22
Osa04LNT0484500.1 osa-miR812c Cleavage 5.0 8.425 1 22
Osa04LNT0484500.1 osa-miR812d Cleavage 5.0 8.425 1 22
Osa04LNT0484500.1 osa-miR812e Cleavage 5.0 8.425 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa04LNT0484500.1 4 qOVA-4 Resistance or Tolerance Insect resistance R1854 C946
Osa04LNT0484500.1 4 qCTS4-1 Resistance or Tolerance Cold tolerance RM335 RM261
Osa04LNT0484500.1 4 qSNP-4a Morphological trait Panicle/flower RM401 RM335
Osa04LNT0484500.1 4 nan Resistance or Tolerance Other soil stress tolerance C946 R1854
Osa04LNT0484500.1 4 spp4-2 Morphological trait Panicle/flower RG449 CDO456
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus