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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa12LNT0566600.1

CCTCCATATTTTAATGTATGACACCGTTGACTTTTTGTCTAACGTTTAACCATTCGTCTTATTCAAAAATTTTATGTAATTATCATTTATTTTATTATGACTTGATTCGTCATCAAATGTTCTTTAGCATGAAATAAATATTTTTATATTTGCACAAAAATTTTGAATAAAACGAATGGTCAAACGTTGGTCGAAAAGTCAACGGTGTCATACATTCAAATACGGAGG

Coding Potentia
Explanation CPC Score
noncoding -1.32162
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa12LNT0566600.1 osa-miR812s Translation 4.5 8.102 1 24
Osa12LNT0566600.1 osa-miR5799 Translation 3.0 8.102 1 24
Osa12LNT0566600.1 osa-miR812a Cleavage 2.5 8.098 1 22
Osa12LNT0566600.1 osa-miR812b Cleavage 2.5 8.098 1 22
Osa12LNT0566600.1 osa-miR812c Cleavage 2.5 8.098 1 22
Osa12LNT0566600.1 osa-miR812d Cleavage 2.5 8.098 1 22
Osa12LNT0566600.1 osa-miR812e Cleavage 2.5 8.098 1 22
Osa12LNT0566600.1 osa-miR812f Cleavage 4.0 8.037 1 24
Osa12LNT0566600.1 osa-miR812g Translation 3.5 8.102 1 24
Osa12LNT0566600.1 osa-miR812h Translation 3.5 8.102 1 24
Osa12LNT0566600.1 osa-miR812i Translation 3.5 8.102 1 24
Osa12LNT0566600.1 osa-miR812j Translation 3.5 8.102 1 24
Osa12LNT0566600.1 osa-miR812k Cleavage 4.0 8.037 1 24
Osa12LNT0566600.1 osa-miR812l Cleavage 4.0 8.037 1 24
Osa12LNT0566600.1 osa-miR812m Cleavage 4.0 8.037 1 24
Osa12LNT0566600.1 osa-miR812o-3p Cleavage 3.0 9.973 1 24
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa12LNT0566600.1 12 qDLA-12-3 Resistance or Tolerance Blast resistance RG463 RZ816
Osa12LNT0566600.1 12 nan Morphological trait Seed RG543 RG81
Osa12LNT0566600.1 12 spl11 Others Others nan nan
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus