>Osa06LNT0498000.1

GAACTCTAATGAAGACAAACTTTATATCAAACTTGTAGCCCTCGATTTACAACTTTGTAGTCGATTTTTTTTATTTTAAGTCATTTTTTGTCCCAAAATATAATTTTAAAATTAAAATTTCAAAATCTATAAACATGCAACAATATTTTGGGACCCTAAACAGTTTTAATTCAAAAACTTTTCTACTACAAAGTTGTAGGTCGTGTCGAGGGCTACAATTTTGATATAAAGTTTGTCATCATTAGAGTTC

Explanation	CPC Score
noncoding	-1.09754

Transcript ID	Chromosome	Locus	Ref	Alt

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts
Osa06LNT0498000.1	DTM_#DNAt_MULE_japo_Os0089	Chr6	-	6499396	6500133	249

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa06LNT0498000.1	6	nan	Physiological trait	Eating quality	RM253	RM162
Osa06LNT0498000.1	6	nan	Morphological trait	Panicle/flower	RM276	RM121
Osa06LNT0498000.1	6	nan	Physiological trait	Source activity	RM276	RM121
Osa06LNT0498000.1	6	spf6	Physiological trait	Sterility	RG213	RM557
Osa06LNT0498000.1	6	qGT-6	Physiological trait	Eating quality	RM276	RM121
Osa06LNT0498000.1	6	nan	Physiological trait	Eating quality	RM276	RM549
Osa06LNT0498000.1	6	nan	Physiological trait	Eating quality	RM276	RM549
Osa06LNT0498000.1	6	nan	Physiological trait	Eating quality	RM276	RM549
Osa06LNT0498000.1	6	amy6-1	Physiological trait	Eating quality	RM3	RM217
Osa06LNT0498000.1	6	asv6-1	Physiological trait	Eating quality	RM3	RM217
Osa06LNT0498000.1	6	tns6	Morphological trait	Panicle/flower	RG138	RG64
Osa06LNT0498000.1	6	sd6	Morphological trait	Panicle/flower	RG138	RG64
Osa06LNT0498000.1	6	sd6	Morphological trait	Seed	RG138	RG64
Osa06LNT0498000.1	6	qLDLJ-6-1,2,3	Physiological trait	Source activity	RM217	RM3
Osa06LNT0498000.1	6	S5	Physiological trait	Sterility	RG213	C235
Osa06LNT0498000.1	6	tns6	Morphological trait	Seed	RG138	RG64

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus