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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa01LNT0009800.1

AATAGATTACGCCGTTGACTTTTTCTCACATGTTTGACCATTCGTCTTTTTCAAAAATTTTATGTAAATGTATAAGATATAAATCACACTTAAAGTACCATGAGTGATAAAACAACTCATAACAAAATAAATTATAATTACGTAAATTTTTTGAATAAGACGAATGGTCAAACATGTGAGAAAAAGTCAACGACGTCATCTATT

Coding Potentia
Explanation CPC Score
noncoding -1.51887
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa01LNT0009800.1 osa-miR5799 Translation 2.5 7.0 1 24
Osa01LNT0009800.1 osa-miR5824 Cleavage 5.0 6.264 1 24
Osa01LNT0009800.1 osa-miR169i-3p Translation 4.5 10.309 1 22
Osa01LNT0009800.1 osa-miR812a Cleavage 5.0 6.342 1 22
Osa01LNT0009800.1 osa-miR812b Cleavage 5.0 6.342 1 22
Osa01LNT0009800.1 osa-miR812c Cleavage 5.0 6.342 1 22
Osa01LNT0009800.1 osa-miR812d Cleavage 5.0 6.342 1 22
Osa01LNT0009800.1 osa-miR812e Cleavage 5.0 6.342 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa01LNT0009800.1 1 nan Morphological trait Root RM7383 RM243
Osa01LNT0009800.1 1 nan Morphological trait Root RM7383 RM23
Osa01LNT0009800.1 1 Rf Physiological trait Sterility nan nan
Osa01LNT0009800.1 1 ppp1.1 Morphological trait Panicle/flower RG140 RM243
Osa01LNT0009800.1 1 prg1.2 Physiological trait Source activity RG140 RM243
Osa01LNT0009800.1 1 spp1.2 Morphological trait Panicle/flower RG140 RM243
Osa01LNT0009800.1 1 nan Physiological trait Source activity RG532 RM472
Osa01LNT0009800.1 1 nan Resistance or Tolerance Salinity tolerance RM1 R886
Osa01LNT0009800.1 1 nan Resistance or Tolerance Salinity tolerance RM1 R886
Osa01LNT0009800.1 1 nan Resistance or Tolerance Salinity tolerance RM1 RM5
Osa01LNT0009800.1 1 gp1 Morphological trait Panicle/flower RG532 RM259
Osa01LNT0009800.1 1 nan Resistance or Tolerance Other soil stress tolerance C955 C885
Osa01LNT0009800.1 1 nan Resistance or Tolerance Other soil stress tolerance C955 C885
Osa01LNT0009800.1 1 nan Resistance or Tolerance Other soil stress tolerance C955 C885
Osa01LNT0009800.1 1 nan Resistance or Tolerance Other soil stress tolerance C955 C885
Osa01LNT0009800.1 1 nan Resistance or Tolerance Lodging resistance R1944 C955
Osa01LNT0009800.1 1 An9 Morphological trait Panicle/flower nan nan
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus