Transcript

Sequence

>Osa07LNT0523100.1

GACTTAGGAACTGCTCCCTCCATCCATAAATATTTGACGCCGTTGACTTTCTTAAACATGTTTAACTGTTCGTCTTATTAAAAACTTTTGTGAAATATGTAAAACTATATATATACATAAAAATATATTTAACAATGAATCAAATGATAGGAAAAGAATTAATAATTACTTAAATTTTTTAAATAAGACGAACGGTCAAACATGTTTAAAAAAGTCAACGGCGTTAAATATTTAGGGACGGAGGGAGTACATCCCTATGTC

Coding Potentia

Explanation	CPC Score
noncoding	-1.35531

Genome Browser

Expression

Axis x: Treatment
Axis y: FPKM
Value above bar: Standard deviation

Variation

Transcript ID	Chromosome	Locus	Ref	Alt

Transposon

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

small RNA targets

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa07LNT0523100.1	osa-miR812s	Translation	3.0	10.174	1	24
Osa07LNT0523100.1	osa-miR6248	Cleavage	3.0	8.463	1	21
Osa07LNT0523100.1	osa-miR812a	Cleavage	3.5	8.732	1	22
Osa07LNT0523100.1	osa-miR812b	Cleavage	3.5	8.732	1	22
Osa07LNT0523100.1	osa-miR812c	Cleavage	3.5	8.732	1	22
Osa07LNT0523100.1	osa-miR812d	Cleavage	3.5	8.732	1	22
Osa07LNT0523100.1	osa-miR812e	Cleavage	3.5	8.732	1	22

QTL

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa07LNT0523100.1	7	gp7a	Morphological trait	Panicle/flower	R1440	RG128
Osa07LNT0523100.1	7	gw7	Morphological trait	Panicle/flower	R1440	RG128
Osa07LNT0523100.1	7	tp7b	Morphological trait	Culm/leaf	R1440	RG128
Osa07LNT0523100.1	7	yd7a	Morphological trait	Panicle/flower	R1440	RG128
Osa07LNT0523100.1	7	nan	Resistance or Tolerance	Insect resistance	RG773	CDO59
Osa07LNT0523100.1	7	qSNC-7	Resistance or Tolerance	Salinity tolerance	C1057	R2401

pre-miRNA

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

GWAS

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus